TissueMosaic
  • Getting Started

API

  • Data
  • Gene regression
  • Input/Output
  • Models
  • Plots
  • Miscellaneous Utilities

Tutorials

  • Tutorial to run TissueMosaic on example Testis Slide-seqV2 dataset
  • Motif Query / Clustering
  • Gene Regression
  • Conditional Motif Enrichment
TissueMosaic
  • Overview: module code

All modules for which code is available

  • tissuemosaic.genex.gene_utils
  • tissuemosaic.genex.gene_visualization
  • tissuemosaic.io.download
  • tissuemosaic.io.read_anndata_from_csv
  • tissuemosaic.models.classifier_regressor.scikit_learn_interface
  • tissuemosaic.models.patch_analyzer.patch_analyzer
  • tissuemosaic.utils.dict_util
  • tissuemosaic.utils.validation_util
  • torch

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