Welcome to TissueMosaic’s documentation!

• Getting Started

API

• Data
  • DataModule
  • SparseImage
• Gene regression
  • GeneDataset
  • make_gene_dataset_from_anndata()
  • train_test_val_split()
  • plot_gene_hist()
• Input/Output
  • download_from_bucket()
  • anndata_from_expression_csv()
• Models
  • Mlp Classification and Regression
  • Self Supervised Models
  • Patch Analyzers
• Plots
• Miscellaneous Utilities
  • Dictionary utilities
  • Validation utilities

Tutorials

• Tutorial to run TissueMosaic on example Testis Slide-seqV2 dataset
• Motif Query / Clustering
• Gene Regression
• Conditional Motif Enrichment

Indices and tables

• Index

• Module Index

• Search Page